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SRX21934521: GSM7814518: 1 hour after -Pi, biol repl 1; Nakaseomyces glabratus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 5.8M spots, 431.6M bases, 225.2Mb downloads

External Id: GSM7814518_r1
Submitted by: Gene Regulatory Evolution, Biology, the University of Iowa
Study: Divergence of TORC1-mediated Stress Response Leads to Novel Acquired Stress Resistance in a Pathogenic Yeast
show Abstracthide Abstract
Acquired stress resistance (ASR) enables organisms to prepare for environmental changes that occur after an initial stressor. However, the genetic basis for ASR and how the underlying network evolved remain poorly understood. In this study, we discovered that a short phosphate starvation induces oxidative stress response (OSR) genes in the pathogenic yeast C. glabrata and protects it against a severe H2O2 stress; the same treatment, however, provides little benefit in the low pathogenic-potential relative, S. cerevisiae. This ASR involves the same transcription factors (TFs) as the OSR, but with different combinatorial logics. We show that Target-of- Rapamycin Complex 1 (TORC1) is differentially inhibited by phosphate starvation in the two species and contributes to the ASR via its proximal effector, Sch9. Therefore, evolution of the phosphate starvation-induced ASR involves the rewiring of TORC1's response to phosphate limitation and the repurposing of TF-target gene networks for the OSR using new regulatory logics. Overall design: To test the hypothesis that phosphate starvation induces oxidative stress response genes in C. glabrata, conferring protection for H2O2 as a secondary stress, we profiled the transcriptional response at 1 hour of phosphate starvation in C. glabrata and compared it with the response to the same treatment in S. cerevisiae from (Zhou and O'Shea 2011). Two biological replicates before phosphate starvation and 3 biological replicates at 1 hour after the start of the starvation were collected and processed.
Sample: 1 hour after -Pi, biol repl 1
SAMN37609339 • SRS19015845 • All experiments • All runs
Library:
Name: GSM7814518
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Briefly, 5 mL of culture was added directly into 7.5 mL of pre-chilled methanol (−50°C) and incubated in an ethanol-dry ice bath at that temperature for at least 20 min. When all samples were in the ethanol-dry ice bath for > 20 minutes, cells were collected by centrifugation and quickly washed with ice-cold water to remove the methanol and resuspended in RNAlater solution (Qiagen, 76104) for at least 2 hours. Cells were centrifuged to remove the RNAlater, flash-frozen in liquid nitrogen and stored at -80 C until RNA-extraction. For each sample, ∼5x10^7 cells were collected and total RNA was extracted using a MasterPure Yeast RNA purification kit (Biosearch Technologies, MPY03100) following the manufacturer's protocol. RNA-seq libraries were prepared with the TruSeq RNA Library Preparation Kit v2 (Illumina) with the mRNA purification option.
Runs: 1 run, 5.8M spots, 431.6M bases, 225.2Mb
Run# of Spots# of BasesSizePublished
SRR262241855,754,956431.6M225.2Mb2023-10-15

ID:
29834601

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